GitRelate(d)
Related Repositories for pachterlab/kallisto
Repository
⭐ Stars
🍴 Forks
Ratio
pachterlab/kallisto
680
48
14.17
alexdobin/STAR
203
18
11.28
seandavi/awesome-single-cell
180
34
5.29
COMBINE-lab/salmon
173
19
9.11
OpenGene/fastp
162
10
16.20
tensorflow/tensorflow
156
18
8.67
pachterlab/sleuth
155
12
12.92
google/deepvariant
148
15
9.87
lh3/bwa
146
24
6.08
ewels/MultiQC
146
30
4.87
lh3/seqtk
145
18
8.06
lh3/minimap2
144
19
7.58
samtools/samtools
136
26
5.23
satijalab/seurat
127
36
3.53
broadinstitute/picard
125
17
7.35
arq5x/bedtools2
122
22
5.55
ncbi/sra-tools
121
12
10.08
broadinstitute/gatk
121
15
8.07
griffithlab/rnaseq_tutorial
111
18
6.17
biopython/biopython
110
29
3.79
deepmind/alphafold
109
7
15.57
jokergoo/ComplexHeatmap
107
9
11.89
shenwei356/seqkit
106
6
17.67
danielecook/Awesome-Bioinformatics
101
21
4.81
nextflow-io/nextflow
99
15
6.60
JuliaLang/julia
99
14
7.07
scikit-learn/scikit-learn
99
27
3.67
sindresorhus/awesome
95
9
10.56
vinta/awesome-python
94
13
7.23
snakemake/snakemake
93
16
5.81
BenLangmead/bowtie2
93
9
10.33
samtools/htslib
92
18
5.11
trinityrnaseq/trinityrnaseq
91
14
6.50
bbuchfink/diamond
91
8
11.38
jlevy/the-art-of-command-line
91
5
18.20
lmcinnes/umap
89
6
14.83
pytorch/pytorch
89
9
9.89
pditommaso/awesome-pipeline
88
10
8.80
soedinglab/MMseqs2
88
5
17.60
bwa-mem2/bwa-mem2
88
4
22.00
josephmisiti/awesome-machine-learning
88
10
8.80
theislab/scanpy
87
15
5.80
crazyhottommy/RNA-seq-analysis
85
17
5.00
marcelm/cutadapt
85
9
9.44
stephenturner/oneliners
85
19
4.47
pysam-developers/pysam
84
13
6.46
gpertea/stringtie
84
9
9.33
thomasp85/patchwork
83
3
27.67
bioconda/bioconda-recipes
83
81
1.02
hussius/deeplearning-biology
82
9
9.11
deweylab/RSEM
82
11
7.45
spotify/luigi
82
3
27.33
brentp/mosdepth
82
10
8.20
rust-bio/rust-bio
80
14
5.71
TheAlgorithms/Python
80
11
7.27
CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
80
7
11.43
jakevdp/PythonDataScienceHandbook
79
12
6.58
chapmanb/bcbio-nextgen
79
15
5.27
mwaskom/seaborn
78
9
8.67
common-workflow-language/common-workflow-language
77
9
8.56
marbl/canu
77
8
9.62
tqdm/tqdm
77
1
77.00
huggingface/transformers
76
7
10.86
torvalds/linux
76
10
7.60
Illumina/strelka
75
1
75.00
lh3/bioawk
75
13
5.77
theislab/single-cell-tutorial
75
13
5.77
nf-core/rnaseq
75
12
6.25
samtools/bcftools
74
11
6.73
tanghaibao/jcvi
72
7
10.29
gmarcais/Jellyfish
72
8
9.00
ablab/spades
72
7
10.29
dmlc/xgboost
71
7
10.14
vgteam/vg
71
5
14.20
pezmaster31/bamtools
71
10
7.10
slowkow/ggrepel
71
1
71.00
gpertea/gffread
71
4
17.75
robbyrussell/oh-my-zsh
71
9
7.89
google/jax
70
3
23.33
hms-dbmi/UpSetR
70
7
10.00
junegunn/fzf
69
3
23.00
tensorflow/models
69
7
9.86
cole-trapnell-lab/cufflinks
69
9
7.67
mamba-org/mamba
69
3
23.00
pachterlab/gget
69
8
8.62
samtools/hts-specs
69
13
5.31
CGATOxford/UMI-tools
69
12
5.75
adam-p/markdown-here
68
8
8.50
deeptools/pyGenomeTracks
68
4
17.00
pola-rs/polars
68
4
17.00
neovim/neovim
68
3
22.67
fritzsedlazeck/Sniffles
67
6
11.17
DerrickWood/kraken2
67
7
9.57
rrwick/Bandage
67
8
8.38
jgm/pandoc
67
11
6.09
plotly/dash
66
0
crazyhottommy/ChIP-seq-analysis
66
10
6.60
taoliu/MACS
66
13
5.08
tldr-pages/tldr
66
6
11.00
hail-is/hail
66
5
13.20
Show More