Related Repositories for soedinglab/MMseqs2

Repository	⭐ Stars	🍴 Forks	Ratio
soedinglab/MMseqs2	1,320	65	20.31
deepmind/alphafold	372	62	6.00
facebookresearch/esm	343	50	6.86
sokrypton/ColabFold	275	38	7.24
aqlaboratory/openfold	248	42	5.90
lh3/minimap2	245	22	11.14
steineggerlab/foldseek	242	14	17.29
huggingface/transformers	234	38	6.16
OpenGene/fastp	225	17	13.24
bbuchfink/diamond	221	16	13.81
shenwei356/seqkit	208	18	11.56
biopython/biopython	208	65	3.20
tensorflow/tensorflow	195	38	5.13
TheAlgorithms/Python	192	26	7.38
RosettaCommons/RoseTTAFold	190	27	7.04
lh3/seqtk	188	20	9.40
pytorch/pytorch	185	29	6.38
google/jax	183	7	26.14
soedinglab/hh-suite	182	18	10.11
google/deepvariant	179	16	11.19
danielecook/Awesome-Bioinformatics	174	29	6.00
agemagician/ProtTrans	171	15	11.40
deepmind/deepmind-research	168	16	10.50
yangkky/Machine-learning-for-proteins	167	15	11.13
RosettaCommons/RFdiffusion	160	18	8.89
kblin/ncbi-genome-download	160	17	9.41
jlevy/the-art-of-command-line	152	16	9.50
pola-rs/polars	152	5	30.40
weizhongli/cdhit	151	19	7.95
sindresorhus/awesome	149	15	9.93
google-research/google-research	149	19	7.84
dauparas/ProteinMPNN	148	25	5.92
nextflow-io/nextflow	146	18	8.11
deepchem/deepchem	143	18	7.94
snakemake/snakemake	141	19	7.42
seandavi/awesome-single-cell	140	16	8.75
lmcinnes/umap	140	6	23.33
lh3/bwa	139	24	5.79
mamba-org/mamba	139	2	69.50
microsoft/DeepSpeed	138	8	17.25
rust-bio/rust-bio	136	11	12.36
evolutionaryscale/esm	136	9	15.11
facebookresearch/faiss	135	10	13.50
vgteam/vg	135	15	9.00
fenderglass/Flye	134	12	11.17
JuliaLang/julia	133	17	7.82
DerrickWood/kraken2	133	19	7.00
ewels/MultiQC	133	22	6.05
vinta/awesome-python	132	18	7.33
Peldom/papers_for_protein_design_using_DL	132	13	10.15
pachterlab/gget	131	6	21.83
scikit-learn/scikit-learn	131	24	5.46
stephenturner/oneliners	130	19	6.84
voutcn/megahit	130	12	10.83
tseemann/prokka	129	18	7.17
tanghaibao/jcvi	128	18	7.11
torognes/vsearch	128	9	14.22
slundberg/shap	126	5	25.20
3b1b/manim	126	6	21.00
samtools/samtools	126	19	6.63
hussius/deeplearning-biology	125	15	8.33
alexdobin/STAR	124	12	10.33
a-r-j/graphein	124	10	12.40
davidemms/OrthoFinder	124	17	7.29
cxli233/FriendsDontLetFriends	123	1	123.00
eggnogdb/eggnog-mapper	123	11	11.18
gamcil/clinker	122	11	11.09
ablab/spades	122	7	17.43
f/awesome-chatgpt-prompts	121	5	24.20
thackl/gggenomes	119	6	19.83
rrwick/Unicycler	119	11	10.82
streamlit/streamlit	119	4	29.75
oschwengers/bakta	118	8	14.75
schrodinger/pymol-open-source	118	12	9.83
cmdcolin/awesome-genome-visualization	117	12	9.75
ggerganov/llama.cpp	117	10	11.70
ncbi/sra-tools	116	11	10.55
ComparativeGenomicsToolkit/cactus	116	7	16.57
arq5x/bedtools2	115	12	9.58
biotite-dev/biotite	114	12	9.50
plotly/dash	114	4	28.50
hyattpd/Prodigal	113	10	11.30
rrwick/Bandage	112	7	16.00
donnemartin/system-design-primer	112	8	14.00
ray-project/ray	112	8	14.00
tqdm/tqdm	111	2	55.50
bwa-mem2/bwa-mem2	111	6	18.50
Ecogenomics/GTDBTk	110	6	18.33
broadinstitute/gatk	110	14	7.86
lucidrains/alphafold2	110	14	7.86
EbookFoundation/free-programming-books	110	5	22.00
marbl/canu	109	11	9.91
tanghaibao/goatools	107	8	13.38
chhylp123/hifiasm	107	10	10.70
ParBLiSS/FastANI	106	6	17.67
google/python-fire	106	2	53.00
COMBINE-lab/salmon	105	11	9.55
jakevdp/PythonDataScienceHandbook	105	21	5.00
bioconda/bioconda-recipes	105	124	0.85
lucidrains/alphafold3-pytorch	105	9	11.67