Related Repositories for broadinstitute/gatk

Repository	⭐ Stars	🍴 Forks	Ratio
broadinstitute/gatk	1,725	142	12.15
google/deepvariant	410	49	8.37
lh3/bwa	391	45	8.69
tensorflow/tensorflow	359	71	5.06
OpenGene/fastp	328	37	8.86
samtools/samtools	326	49	6.65
broadinstitute/picard	305	49	6.22
lh3/minimap2	302	27	11.19
biopython/biopython	254	52	4.88
TheAlgorithms/Python	246	37	6.65
nextflow-io/nextflow	242	30	8.07
seandavi/awesome-single-cell	237	41	5.78
alexdobin/STAR	233	22	10.59
scikit-learn/scikit-learn	224	45	4.98
danielecook/Awesome-Bioinformatics	224	31	7.23
vinta/awesome-python	219	22	9.95
pytorch/pytorch	214	36	5.94
sindresorhus/awesome	212	32	6.62
broadinstitute/cromwell	210	31	6.77
lh3/seqtk	209	26	8.04
huggingface/transformers	207	17	12.18
shenwei356/seqkit	202	17	11.88
bwa-mem2/bwa-mem2	196	8	24.50
samtools/bcftools	191	16	11.94
deepmind/alphafold	191	19	10.05
ewels/MultiQC	187	32	5.84
torvalds/linux	186	34	5.47
arq5x/bedtools2	181	22	8.23
jlevy/the-art-of-command-line	178	21	8.48
JuliaLang/julia	177	12	14.75
ncbi/sra-tools	176	18	9.78
satijalab/seurat	175	32	5.47
samtools/htslib	175	32	5.47
hail-is/hail	175	16	10.94
donnemartin/system-design-primer	174	17	10.24
snakemake/snakemake	169	20	8.45
tensorflow/models	167	35	4.77
jwasham/coding-interview-university	164	23	7.13
pditommaso/awesome-pipeline	162	14	11.57
kubernetes/kubernetes	161	23	7.00
dmlc/xgboost	160	15	10.67
apache/spark	158	40	3.95
josephmisiti/awesome-machine-learning	157	25	6.28
vgteam/vg	154	14	11.00
rust-lang/rust	151	12	12.58
bioconda/bioconda-recipes	150	90	1.67
plotly/dash	149	5	29.80
jakevdp/PythonDataScienceHandbook	149	22	6.77
golang/go	148	12	12.33
etal/cnvkit	148	21	7.05
brentp/mosdepth	146	12	12.17
EbookFoundation/free-programming-books	145	17	8.53
keras-team/keras	145	20	7.25
pysam-developers/pysam	145	23	6.30
Illumina/strelka	145	14	10.36
kamranahmedse/developer-roadmap	144	14	10.29
BenLangmead/bowtie2	144	12	12.00
galaxyproject/galaxy	144	25	5.76
facebook/react	144	17	8.47
vcftools/vcftools	143	13	11.00
igvteam/igv	143	16	8.94
python/cpython	142	32	4.44
ray-project/ray	141	14	10.07
pandas-dev/pandas	141	15	9.40
jokergoo/ComplexHeatmap	141	15	9.40
numpy/numpy	139	18	7.72
stephenturner/oneliners	138	24	5.75
Ensembl/ensembl-vep	138	18	7.67
google/jax	135	13	10.38
jackfrued/Python-100-Days	135	29	4.66
Illumina/manta	134	17	7.88
samtools/hts-specs	134	28	4.79
bbuchfink/diamond	133	8	16.62
griffithlab/rnaseq_tutorial	132	30	4.40
twbs/bootstrap	132	23	5.74
streamlit/streamlit	132	6	22.00
tiangolo/fastapi	131	7	18.71
ggerganov/llama.cpp	131	11	11.91
fastai/fastai	131	17	7.71
COMBINE-lab/salmon	130	10	13.00
ossu/bioinformatics	129	15	8.60
ossu/computer-science	129	10	12.90
github/gitignore	128	37	3.46
django/django	128	24	5.33
bigdatagenomics/adam	127	15	8.47
nvbn/thefuck	126	7	18.00
tesseract-ocr/tesseract	126	6	21.00
BVLC/caffe	124	16	7.75
robbyrussell/oh-my-zsh	124	16	7.75
google-research/google-research	124	16	7.75
rust-bio/rust-bio	123	12	10.25
aymericdamien/TensorFlow-Examples	123	24	5.12
tqdm/tqdm	122	3	40.67
neovim/neovim	122	9	13.56
trinityrnaseq/trinityrnaseq	121	17	7.12
Developer-Y/cs-video-courses	121	11	11.00
pachterlab/kallisto	121	14	8.64
CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers	120	20	6.00
google/nucleus	120	8	15.00
biod/sambamba	120	7	17.14