Related Repositories for arq5x/bedtools2

Repository	⭐ Stars	🍴 Forks	Ratio
arq5x/bedtools2	981	74	13.26
samtools/samtools	327	47	6.96
lh3/bwa	270	40	6.75
OpenGene/fastp	231	21	11.00
alexdobin/STAR	230	26	8.85
lh3/minimap2	222	17	13.06
lh3/seqtk	220	22	10.00
tensorflow/tensorflow	217	39	5.56
biopython/biopython	207	46	4.50
google/deepvariant	206	21	9.81
broadinstitute/picard	201	20	10.05
seandavi/awesome-single-cell	186	26	7.15
ewels/MultiQC	184	41	4.49
broadinstitute/gatk	181	25	7.24
samtools/htslib	177	34	5.21
shenwei356/seqkit	177	12	14.75
scikit-learn/scikit-learn	160	37	4.32
nextflow-io/nextflow	155	30	5.17
samtools/bcftools	154	19	8.11
ncbi/sra-tools	153	15	10.20
danielecook/Awesome-Bioinformatics	147	26	5.65
bioconda/bioconda-recipes	147	113	1.30
sindresorhus/awesome	145	17	8.53
marcelm/cutadapt	145	12	12.08
jlevy/the-art-of-command-line	144	14	10.29
stephenturner/oneliners	143	24	5.96
BenLangmead/bowtie2	143	16	8.94
pysam-developers/pysam	141	34	4.15
vinta/awesome-python	141	16	8.81
brentp/mosdepth	135	11	12.27
JuliaLang/julia	132	13	10.15
bwa-mem2/bwa-mem2	130	8	16.25
lh3/bioawk	129	14	9.21
TheAlgorithms/Python	127	16	7.94
pezmaster31/bamtools	126	19	6.63
satijalab/seurat	125	20	6.25
bbuchfink/diamond	124	7	17.71
griffithlab/rnaseq_tutorial	123	26	4.73
pachterlab/kallisto	122	14	8.71
mwaskom/seaborn	121	17	7.12
rust-bio/rust-bio	120	18	6.67
bedops/bedops	119	9	13.22
CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers	119	26	4.58
josephmisiti/awesome-machine-learning	119	16	7.44
vcftools/vcftools	118	9	13.11
robbyrussell/oh-my-zsh	118	14	8.43
deepmind/alphafold	118	9	13.11
COMBINE-lab/salmon	118	14	8.43
soedinglab/MMseqs2	115	4	28.75
jokergoo/ComplexHeatmap	115	11	10.45
snakemake/snakemake	114	15	7.60
samtools/hts-specs	114	22	5.18
adam-p/markdown-here	113	10	11.30
pditommaso/awesome-pipeline	113	13	8.69
marbl/canu	113	7	16.14
spotify/luigi	112	6	18.67
igvteam/igv	112	11	10.18
jgm/pandoc	112	6	18.67
torvalds/linux	112	12	9.33
rust-lang/rust	111	9	12.33
junegunn/fzf	110	3	36.67
pytorch/pytorch	110	7	15.71
gmarcais/Jellyfish	109	14	7.79
vgteam/vg	108	12	9.00
tanghaibao/jcvi	107	12	8.92
ekg/freebayes	107	21	5.10
deeptools/pyGenomeTracks	106	10	10.60
torognes/vsearch	106	4	26.50
hakimel/reveal.js	106	14	7.57
rrwick/Bandage	106	6	17.67
golang/go	105	7	15.00
jakevdp/PythonDataScienceHandbook	104	17	6.12
koalaman/shellcheck	104	3	34.67
deeptools/deepTools	104	13	8.00
BurntSushi/ripgrep	104	1	104.00
thomasp85/patchwork	103	6	17.17
github/gitignore	103	25	4.12
tmux/tmux	102	4	25.50
fritzsedlazeck/Sniffles	101	7	14.43
dmlc/xgboost	101	7	14.43
shenwei356/csvtk	101	6	16.83
brentp/vcfanno	100	8	12.50
nvbn/thefuck	100	5	20.00
plotly/dash	100	5	20.00
lmcinnes/umap	100	6	16.67
ipython/ipython	100	15	6.67
neovim/neovim	99	5	19.80
huggingface/transformers	97	1	97.00
ryanlayer/samplot	97	9	10.78
mummer4/mummer	97	9	10.78
trinityrnaseq/trinityrnaseq	96	14	6.86
weizhongli/cdhit	96	10	9.60
igvteam/igv.js	95	5	19.00
etal/cnvkit	95	17	5.59
lindenb/jvarkit	95	7	13.57
gpertea/gffread	95	4	23.75
s-andrews/FastQC	95	7	13.57
kblin/ncbi-genome-download	94	6	15.67
tensorflow/models	94	10	9.40
daler/pybedtools	94	15	6.27