Related Repositories for gpertea/gffread

Repository	⭐ Stars	🍴 Forks	Ratio
gpertea/gffread	376	9	41.78
OpenGene/fastp	138	8	17.25
lh3/minimap2	128	12	10.67
alexdobin/STAR	117	10	11.70
lh3/seqtk	114	11	10.36
lh3/bwa	103	17	6.06
shenwei356/seqkit	102	7	14.57
samtools/samtools	97	12	8.08
NBISweden/AGAT	95	4	23.75
arq5x/bedtools2	95	8	11.88
ewels/MultiQC	94	17	5.53
google/deepvariant	92	10	9.20
ncbi/sra-tools	91	7	13.00
broadinstitute/gatk	87	10	8.70
soedinglab/MMseqs2	84	4	21.00
bbuchfink/diamond	83	7	11.86
danielecook/Awesome-Bioinformatics	82	12	6.83
gpertea/gffcompare	81	5	16.20
brentp/mosdepth	81	6	13.50
davidemms/OrthoFinder	81	13	6.23
gpertea/stringtie	80	3	26.67
ryanlayer/samplot	80	4	20.00
COMBINE-lab/salmon	80	6	13.33
tanghaibao/jcvi	80	10	8.00
thackl/gggenomes	80	3	26.67
nextflow-io/nextflow	79	8	9.88
bwa-mem2/bwa-mem2	78	5	15.60
snakemake/snakemake	78	10	7.80
TheAlgorithms/Python	77	6	12.83
jokergoo/ComplexHeatmap	77	6	12.83
fenderglass/Flye	77	10	7.70
malonge/RagTag	76	5	15.20
agshumate/Liftoff	76	5	15.20
biopython/biopython	75	13	5.77
seandavi/awesome-single-cell	75	11	6.82
deeptools/pyGenomeTracks	73	10	7.30
deepmind/alphafold	73	5	14.60
broadinstitute/picard	73	10	7.30
marbl/canu	72	6	12.00
fritzsedlazeck/Sniffles	72	2	36.00
cmdcolin/awesome-genome-visualization	71	6	11.83
pachterlab/kallisto	71	6	11.83
chhylp123/hifiasm	70	5	14.00
griffithlab/rnaseq_tutorial	69	9	7.67
trinityrnaseq/trinityrnaseq	68	6	11.33
vgteam/vg	68	9	7.56
satijalab/seurat	67	13	5.15
thomasp85/patchwork	67	3	22.33
gmarcais/Jellyfish	67	3	22.33
samtools/htslib	67	10	6.70
shenwei356/csvtk	66	6	11.00
jokergoo/circlize	66	5	13.20
samtools/bcftools	64	8	8.00
tensorflow/tensorflow	64	9	7.11
schneebergerlab/syri	64	2	32.00
deeptools/deepTools	63	9	7.00
deweylab/RSEM	63	3	21.00
marcelm/cutadapt	62	5	12.40
ablab/spades	62	3	20.67
whatshap/whatshap	62	2	31.00
rrwick/Bandage	62	5	12.40
rust-bio/rust-bio	61	5	12.20
weizhongli/cdhit	61	5	12.20
stephenturner/oneliners	61	12	5.08
rmhubley/RepeatMasker	61	3	20.33
lh3/bioawk	61	5	12.20
kblin/ncbi-genome-download	60	5	12.00
mummer4/mummer	60	9	6.67
Gaius-Augustus/BRAKER	60	7	8.57
bioconda/bioconda-recipes	59	43	1.37
biod/sambamba	59	2	29.50
pola-rs/polars	58	2	29.00
BenLangmead/bowtie2	58	3	19.33
Gaius-Augustus/Augustus	58	6	9.67
ComparativeGenomicsToolkit/cactus	58	6	9.67
oushujun/EDTA	58	5	11.60
wdecoster/NanoPlot	58	3	19.33
pangenome/pggb	58	4	14.50
rrwick/Unicycler	58	6	9.67
crazyhottommy/RNA-seq-analysis	57	8	7.12
DerrickWood/kraken2	57	4	14.25
lh3/minigraph	57	4	14.25
daler/gffutils	57	3	19.00
pezmaster31/bamtools	57	8	7.12
jlevy/the-art-of-command-line	56	6	9.33
pysam-developers/pysam	56	9	6.22
vcflib/vcflib	56	1	56.00
gamcil/clinker	56	1	56.00
DaehwanKimLab/hisat2	56	3	18.67
nf-core/rnaseq	56	10	5.60
IndrajeetPatil/ggstatsplot	55	2	27.50
marbl/merqury	55	2	27.50
igvteam/igv	55	6	9.17
pytorch/pytorch	54	8	6.75
mamba-org/mamba	54	2	27.00
fritzsedlazeck/SURVIVOR	54	1	54.00
eggnogdb/eggnog-mapper	53	5	10.60
scikit-learn/scikit-learn	53	11	4.82
tseemann/prokka	53	11	4.82
ablab/quast	53	3	17.67